Create Peak-Gene Links Set up genomicranges objects for the data included in the correlation analysis. Data matrices must have unique feature IDs.

Create Peak-Gene Links Set up genomicranges objects for the data included in the correlation analysis. Data matrices must have unique feature IDs.

Usage

createPeak2GeneObjects(genes, peaks, biomart_ensembl, ucsc_genome)

Arguments

genes

either a character vector of ensembl IDs or a matrix with the row or column names as the ensembl IDs

peaks

a named list of character vectors containing renomic region. Genomic regions should begin with "chr". The list can also contain count matrices, where row names or column names are genomic regions.

Examples